STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SED70606.1Putative ABC transport system ATP-binding protein. (228 aa)    
Predicted Functional Partners:
SEB29265.1
Putative ABC transport system permease protein.
 0.991
SEB31899.1
Putative ABC transport system permease protein.
  
 0.991
SED70580.1
Putative ABC transport system permease protein.
 0.988
SED54282.1
Putative ABC transport system permease protein.
 0.958
SEB29122.1
Putative ABC transport system permease protein.
 0.955
SED70623.1
Multidrug efflux pump subunit AcrA (membrane-fusion protein).
 
 0.955
SED06390.1
Putative ABC transport system permease protein.
  
 0.853
SED70645.1
Hypothetical protein.
 
     0.843
SED54322.1
Multidrug efflux pump subunit AcrA (membrane-fusion protein).
 
 0.804
SEB29255.1
Membrane fusion protein, macrolide-specific efflux system.
 
 0.756
Your Current Organism:
Amycolatopsis tolypomycina
NCBI taxonomy Id: 208445
Other names: A. tolypomycina, ATCC 21177, Amycolatopsis tolypomycina Wink et al. 2003, Amycolatopsis tolypophora, Amycolatopsis tolypophorous, DSM 44544, IFO 14664, IMSNU 20061, JCM 4936, NBRC 14664, NRRL B-24205, Streptomyces tolypophorus
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