STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDZ87096.1ABC-2 type transport system ATP-binding protein. (127 aa)    
Predicted Functional Partners:
SDZ87121.1
ABC-2 type transport system permease protein.
 
    0.905
SDZ87177.1
DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains.
 
     0.803
SDZ87149.1
Signal transduction histidine kinase.
 
    0.800
SEA49980.1
ABC-2 type transport system permease protein.
 
  0.750
SEA33504.1
Peptide/nickel transport system permease protein.
    
  0.731
der
GTP-binding protein; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family.
       0.709
SDZ73493.1
Lipooligosaccharide transport system permease protein.
  
 
  0.708
SDZ87068.1
ABC transporter.
 
     0.683
SDZ87232.1
Putative drug exporter of the RND superfamily.
       0.624
SDZ73510.1
Lipooligosaccharide transport system permease protein.
  
  
  0.572
Your Current Organism:
Actinomyces nasicola
NCBI taxonomy Id: 208480
Other names: A. nasicola, Actinomyces nasico, Actinomyces nasicola Hall et al. 2003, CCUG 46092, CIP 107668, DSM 19116, strain R2014
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.