Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SDZ84544.1 | SDZ96166.1 | SAMN02910418_00375 | SAMN02910418_00656 | Anthranilate phosphoribosyltransferase. | Isochorismate synthase. | 0.873 |
SDZ84544.1 | SEA40361.1 | SAMN02910418_00375 | SAMN02910418_01531 | Anthranilate phosphoribosyltransferase. | Anthranilate synthase component 1. | 0.999 |
SDZ84544.1 | SEA51107.1 | SAMN02910418_00375 | SAMN02910418_01763 | Anthranilate phosphoribosyltransferase. | Para-aminobenzoate synthetase component 2. | 0.999 |
SDZ84544.1 | SEA57943.1 | SAMN02910418_00375 | SAMN02910418_01918 | Anthranilate phosphoribosyltransferase. | Chorismate mutase. | 0.559 |
SDZ84544.1 | aroC | SAMN02910418_00375 | SAMN02910418_01486 | Anthranilate phosphoribosyltransferase. | Chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system. | 0.882 |
SDZ84544.1 | aroE | SAMN02910418_00375 | SAMN02910418_01314 | Anthranilate phosphoribosyltransferase. | Shikimate dehydrogenase; Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA). | 0.421 |
SDZ96166.1 | SDZ84544.1 | SAMN02910418_00656 | SAMN02910418_00375 | Isochorismate synthase. | Anthranilate phosphoribosyltransferase. | 0.873 |
SDZ96166.1 | SDZ96207.1 | SAMN02910418_00656 | SAMN02910418_00657 | Isochorismate synthase. | O-succinylbenzoate synthase; Belongs to the mandelate racemase/muconate lactonizing enzyme family. | 0.911 |
SDZ96166.1 | SDZ96247.1 | SAMN02910418_00656 | SAMN02910418_00658 | Isochorismate synthase. | 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylate synthase. | 0.998 |
SDZ96166.1 | SEA40361.1 | SAMN02910418_00656 | SAMN02910418_01531 | Isochorismate synthase. | Anthranilate synthase component 1. | 0.852 |
SDZ96166.1 | SEA51107.1 | SAMN02910418_00656 | SAMN02910418_01763 | Isochorismate synthase. | Para-aminobenzoate synthetase component 2. | 0.980 |
SDZ96166.1 | SEA57943.1 | SAMN02910418_00656 | SAMN02910418_01918 | Isochorismate synthase. | Chorismate mutase. | 0.955 |
SDZ96166.1 | SEA79271.1 | SAMN02910418_00656 | SAMN02910418_02427 | Isochorismate synthase. | Aspartate/methionine/tyrosine aminotransferase. | 0.923 |
SDZ96166.1 | aroC | SAMN02910418_00656 | SAMN02910418_01486 | Isochorismate synthase. | Chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system. | 0.970 |
SDZ96166.1 | aroE | SAMN02910418_00656 | SAMN02910418_01314 | Isochorismate synthase. | Shikimate dehydrogenase; Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA). | 0.854 |
SDZ96166.1 | menB | SAMN02910418_00656 | SAMN02910418_00655 | Isochorismate synthase. | 1,4-Dihydroxy-2-naphthoyl-CoA synthase; Converts o-succinylbenzoyl-CoA (OSB-CoA) to 1,4-dihydroxy-2- naphthoyl-CoA (DHNA-CoA); Belongs to the enoyl-CoA hydratase/isomerase family. MenB subfamily. | 0.933 |
SDZ96207.1 | SDZ96166.1 | SAMN02910418_00657 | SAMN02910418_00656 | O-succinylbenzoate synthase; Belongs to the mandelate racemase/muconate lactonizing enzyme family. | Isochorismate synthase. | 0.911 |
SDZ96207.1 | SDZ96247.1 | SAMN02910418_00657 | SAMN02910418_00658 | O-succinylbenzoate synthase; Belongs to the mandelate racemase/muconate lactonizing enzyme family. | 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylate synthase. | 0.987 |
SDZ96207.1 | menB | SAMN02910418_00657 | SAMN02910418_00655 | O-succinylbenzoate synthase; Belongs to the mandelate racemase/muconate lactonizing enzyme family. | 1,4-Dihydroxy-2-naphthoyl-CoA synthase; Converts o-succinylbenzoyl-CoA (OSB-CoA) to 1,4-dihydroxy-2- naphthoyl-CoA (DHNA-CoA); Belongs to the enoyl-CoA hydratase/isomerase family. MenB subfamily. | 0.928 |
SDZ96247.1 | SDZ96166.1 | SAMN02910418_00658 | SAMN02910418_00656 | 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylate synthase. | Isochorismate synthase. | 0.998 |
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