STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEA62942.14-hydroxy-tetrahydrodipicolinate synthase. (292 aa)    
Predicted Functional Partners:
dapB
Dihydrodipicolinate reductase; Catalyzes the conversion of 4-hydroxy-tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate; Belongs to the DapB family.
 
 
 0.946
asd
Aspartate-semialdehyde dehydrogenase; Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L-aspartyl- 4-phosphate; Belongs to the aspartate-semialdehyde dehydrogenase family.
 
 
 0.878
SDZ76834.1
Homoserine dehydrogenase.
 
 
 0.813
SEA62971.1
DNA-binding transcriptional regulator, FadR family.
       0.773
SDZ96207.1
O-succinylbenzoate synthase; Belongs to the mandelate racemase/muconate lactonizing enzyme family.
    
 0.723
SDZ94330.1
FAD/FMN-containing dehydrogenase.
   
 
  0.711
SEA33192.1
D-lactate dehydrogenase.
   
 
  0.711
SDZ76808.1
Diaminopimelate decarboxylase.
 
  
 0.696
SEA62912.1
Tat (twin-arginine translocation) pathway signal sequence.
       0.682
SDZ90561.1
Aspartate kinase; Belongs to the aspartokinase family.
 
 
 0.624
Your Current Organism:
Actinomyces nasicola
NCBI taxonomy Id: 208480
Other names: A. nasicola, Actinomyces nasico, Actinomyces nasicola Hall et al. 2003, CCUG 46092, CIP 107668, DSM 19116, strain R2014
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