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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yxkHPutative exported polysaccharide deacetylase, lipoprotein. (252 aa)    
Predicted Functional Partners:
ssuA
Aliphatic sulfonate ABC transporter; Binding lipoprotein.
 
     0.727
pgaC
poly-beta-1,6-N-acetyl-D-glucosamine synthase.
  
  
 0.564
ydaM
Putative glycosyltransferase associated to biofilm formation.
  
  
 0.564
AEB30321.1
Glycosyl transferase family 2.
  
  
 0.542
AEB28975.1
Hypothetical protein.
       0.456
pyk
Pyruvate kinase; Belongs to the pyruvate kinase family.
     
 0.452
AEB30094.1
Hypothetical protein.
 
  
 0.432
Your Current Organism:
Carnobacterium sp. 174
NCBI taxonomy Id: 208596
Other names: C. sp. 17-4, Carnobacterium sp. 17-4
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