Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
ssuAAliphatic sulfonate ABC transporter; Binding lipoprotein. (307 aa)    
Predicted Functional Partners:
ssuC
Aliphatic sulfonate ABC transporter; Permease.
 
 0.996
ssuB
Aliphatic sulfonate ABC transporter; ATP-binding protein.
 
 0.988
amtB
Ammonium transporter; Belongs to the P(II) protein family.
  
 
 0.856
AEB30260.1
Transcriptional regulatory protein.
   
 
 0.742
yxkH
Putative exported polysaccharide deacetylase, lipoprotein.
 
     0.732
AEB29063.1
Osmoprotectant transport system permease protein; Putative glycine/betaine/carnitine/choline ABC transporter, substrate binding and membrane-spanning subunits.
  
 
  0.718
artP
High affinity arginine ABC transporter binding lipoprotein.
  
 
 0.656
glnH2
Glutamine-binding periplasmic protein.
  
 
 0.656
artQ
High affinity arginine ABC transporter; Permease.
  
 
 0.656
appA
Oligopeptide-binding protein AppA.
     
 0.643
Your Current Organism:
Carnobacterium sp. 174
NCBI taxonomy Id: 208596
Other names: C. sp. 17-4, Carnobacterium sp. 17-4
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