Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
abnBArabinan endo-1,5-alpha-L-arabinosidase; Belongs to the glycosyl hydrolase 43 family. (467 aa)    
Predicted Functional Partners:
abfA2
alpha-N-arabinofuranosidase; Belongs to the glycosyl hydrolase 43 family.
 
   
 0.943
abfA3
alpha-N-arabinofuranosidase.
 
  
 0.935
abfA1
alpha-N-arabinofuranosidase.
 
  
 0.846
AEB29017.1
Hypothetical protein.
       0.621
araA
L-arabinose isomerase; Catalyzes the conversion of L-arabinose to L-ribulose.
 
  
 0.602
AEB29014.1
Extracellular solute-binding protein family 1.
 
  
 0.545
AEB29012.1
Transcriptional regulatory protein.
 
     0.540
xynB1
Xylan 1,4-beta-xylosidase; Belongs to the glycosyl hydrolase 43 family.
  
   
 0.514
yobO
Pre-neck appendage protein.
  
  
 0.483
araB
L-ribulokinase.
  
  
 0.455
Your Current Organism:
Carnobacterium sp. 174
NCBI taxonomy Id: 208596
Other names: C. sp. 17-4, Carnobacterium sp. 17-4
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