Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
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[Homology]
Score
yknY2Putative ABC transporter; ATP-binding protein. (229 aa)    
Predicted Functional Partners:
yknZ2
Putative permease.
 
 0.998
yknZ1
Uncharacterized ABC transporter permease YknZ.
 
 0.983
AEB30330.1
Protein of unknown function DUF214.
  
 0.960
AEB29060.1
RND family efflux transporter MFP subunit.
 
 0.948
AEB29063.1
Osmoprotectant transport system permease protein; Putative glycine/betaine/carnitine/choline ABC transporter, substrate binding and membrane-spanning subunits.
    
  0.832
yknX
Putative efflux permease.
 
 0.755
artP
High affinity arginine ABC transporter binding lipoprotein.
   
 0.673
glnH2
Glutamine-binding periplasmic protein.
   
 0.673
artQ
High affinity arginine ABC transporter; Permease.
   
 0.673
AEB30568.1
Transporter.
  
 0.661
Your Current Organism:
Carnobacterium sp. 174
NCBI taxonomy Id: 208596
Other names: C. sp. 17-4, Carnobacterium sp. 17-4
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