Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
AEB29060.1RND family efflux transporter MFP subunit. (287 aa)    
Predicted Functional Partners:
yknZ2
Putative permease.
 
 0.989
AEB28972.1
Putative drug ABC exporter, ATP-binding and membrane-spanning/permease subunits.
  
 0.976
yknY2
Putative ABC transporter; ATP-binding protein.
 
 0.948
AEB30330.1
Protein of unknown function DUF214.
 
 0.932
yknZ1
Uncharacterized ABC transporter permease YknZ.
 
 0.926
yknY1
Uncharacterized ABC transporter ATP-binding protein YknY.
 
 0.759
hrtA
Putative hemin import ATP-binding protein.
  
 0.679
AEB30583.1
Putative ABC exporter, ATP-binding subunit.
  
 0.679
yjbP
Bis(5'-nucleosyl)-tetraphosphatase PrpE.
  
    0.669
AEB30331.1
ABC transporter, ATP-binding protein.
 
 0.641
Your Current Organism:
Carnobacterium sp. 174
NCBI taxonomy Id: 208596
Other names: C. sp. 17-4, Carnobacterium sp. 17-4
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