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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yjbPBis(5'-nucleosyl)-tetraphosphatase PrpE. (245 aa)    
Predicted Functional Partners:
AEB29063.1
Osmoprotectant transport system permease protein; Putative glycine/betaine/carnitine/choline ABC transporter, substrate binding and membrane-spanning subunits.
       0.650
gshR
Putative glycine betaine/carnitine/choline ABC transporter, ATP-binding subunit.
       0.642
AEB29064.1
Mannose PTS, EII.
 
     0.618
AEB29060.1
RND family efflux transporter MFP subunit.
  
    0.614
AEB30320.1
Hypothetical signaling protein.
  
  
 0.605
yknZ2
Putative permease.
  
    0.539
yknY2
Putative ABC transporter; ATP-binding protein.
  
    0.533
AEB29347.1
Conserved hypothetical protein.
  
     0.500
ydcI
Putative RNA helicase.
       0.456
AEB29253.1
Hypothetical protein.
  
     0.453
Your Current Organism:
Carnobacterium sp. 174
NCBI taxonomy Id: 208596
Other names: C. sp. 17-4, Carnobacterium sp. 17-4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.