Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
yjbPBis(5'-nucleosyl)-tetraphosphatase PrpE. (245 aa)    
Predicted Functional Partners:
AEB29060.1
RND family efflux transporter MFP subunit.
  
    0.669
AEB29063.1
Osmoprotectant transport system permease protein; Putative glycine/betaine/carnitine/choline ABC transporter, substrate binding and membrane-spanning subunits.
       0.651
gshR
Putative glycine betaine/carnitine/choline ABC transporter, ATP-binding subunit.
       0.642
AEB29064.1
Mannose PTS, EII.
 
     0.592
AEB30320.1
Hypothetical signaling protein.
  
  
 0.561
yknZ2
Putative permease.
  
    0.557
yknY2
Putative ABC transporter; ATP-binding protein.
  
    0.546
ydcI
Putative RNA helicase.
       0.527
AEB29347.1
Conserved hypothetical protein.
  
     0.500
ydcK
Hypothetical protein.
       0.467
Your Current Organism:
Carnobacterium sp. 174
NCBI taxonomy Id: 208596
Other names: C. sp. 17-4, Carnobacterium sp. 17-4
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