ydcI protein (Carnobacterium sp. 174) - STRING interaction network

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second shell of interactors

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Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

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textmining

co-expression

protein homology

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[Homology]

Score

ydcI

Putative RNA helicase. (725 aa)

Predicted Functional Partners:

rpoA

0.896

rpoB

0.857

rpoZ

0.837

yrrB

0.786

ysoA

0.786

ydcK

0.653

AEB29064.1

0.522

ywqA

0.509

AEB31060.1

0.509

yjbP

0.456

Your Current Organism:

Carnobacterium sp. 174

NCBI taxonomy Id: 208596
Other names: C. sp. 17-4, Carnobacterium sp. 17-4

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AEB29064.1	ydcI	CAR_c03430	CAR_c03440	Mannose PTS, EII.	Putative RNA helicase.	0.522
AEB29064.1	yjbP	CAR_c03430	CAR_c03400	Mannose PTS, EII.	Bis(5'-nucleosyl)-tetraphosphatase PrpE.	0.618
AEB31060.1	rpoA	CAR_c24050	CAR_c24180	Hypothetical protein.	DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.896
AEB31060.1	rpoB	CAR_c24050	CAR_c24540	Hypothetical protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.884
AEB31060.1	rpoZ	CAR_c24050	CAR_c09710	Hypothetical protein.	DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.	0.895
AEB31060.1	ydcI	CAR_c24050	CAR_c03440	Hypothetical protein.	Putative RNA helicase.	0.509
AEB31060.1	yrrB	CAR_c24050	CAR_c08640	Hypothetical protein.	Putative tetratricopeptide repeat family protein.	0.431
AEB31060.1	ysoA	CAR_c24050	CAR_c12790	Hypothetical protein.	Putative hydrolase.	0.418
rpoA	AEB31060.1	CAR_c24180	CAR_c24050	DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Hypothetical protein.	0.896
rpoA	rpoB	CAR_c24180	CAR_c24540	DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
rpoA	rpoZ	CAR_c24180	CAR_c09710	DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.	0.999
rpoA	ydcI	CAR_c24180	CAR_c03440	DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Putative RNA helicase.	0.896
rpoA	yrrB	CAR_c24180	CAR_c08640	DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Putative tetratricopeptide repeat family protein.	0.851
rpoA	ysoA	CAR_c24180	CAR_c12790	DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Putative hydrolase.	0.851
rpoA	ywqA	CAR_c24180	CAR_c10740	DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Putative ATP-binding SNF2 helicase or protein kinase.	0.896
rpoB	AEB31060.1	CAR_c24540	CAR_c24050	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Hypothetical protein.	0.884
rpoB	rpoA	CAR_c24540	CAR_c24180	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
rpoB	rpoZ	CAR_c24540	CAR_c09710	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.	0.998
rpoB	ydcI	CAR_c24540	CAR_c03440	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Putative RNA helicase.	0.857
rpoB	yrrB	CAR_c24540	CAR_c08640	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Putative tetratricopeptide repeat family protein.	0.829