Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
yobOPre-neck appendage protein. (473 aa)    
Predicted Functional Partners:
yycN
Putative N-acetyltransferase.
  
   
 0.767
AEB30177.1
Collagen adhesion protein.
  
 
 0.704
tagF
CDP-glycerolpolyglycerol phosphate glycero-phosphotransferase; RBL05031.
 
     0.690
eag
Putative small membrane protein.
  
     0.687
ydcK
Hypothetical protein.
       0.676
AEB30171.1
Hypothetical protein.
 
 
 0.665
AEB29592.1
Phage tail tape measure protein, TP901 family, core region.
  
   0.660
yxkC
Hypothetical protein.
   
 
 0.659
yqiK
Glycerophosphodiester phosphodiesterase.
    
   0.609
ycbP
Putative inner integral membrane protein.
  
     0.584
Your Current Organism:
Carnobacterium sp. 174
NCBI taxonomy Id: 208596
Other names: C. sp. 17-4, Carnobacterium sp. 17-4
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