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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
comFCPutative component of the DNA transport apparatus. (228 aa)    
Predicted Functional Partners:
comFA
Helicase competence protein.
 
  
 0.935
comEC
DNA channel for uptake in competent cells.
 
  
 0.872
dprA
DNA processing Smf single strand binding protein.
 
 
 0.822
radC2
DNA repair protein RadC; Belongs to the UPF0758 family.
 
    0.790
tyrA
Prephenate dehydrogenase.
   
  
 0.732
comGB
Membrane platform component of the DNA transport machinery.
 
  
 0.670
hemY
Protoporphyrinogen oxidase; Catalyzes the 6-electron oxidation of protoporphyrinogen-IX to form protoporphyrin-IX.
  
    0.665
comEA
Membrane bound high-affinity DNA-binding receptor.
 
  
 0.652
yvyD
Ribosome-associated sigma 54 modulation protein; Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase; 100S ribosomes are translationally inactive and sometimes present during exponential growth.
  
    0.613
flgC
Flagellar basal body rod protein FlgC; Belongs to the flagella basal body rod proteins family.
   
   0.611
Your Current Organism:
Carnobacterium sp. 174
NCBI taxonomy Id: 208596
Other names: C. sp. 17-4, Carnobacterium sp. 17-4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.