STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yvdEPutative glutamine amidotransferase-like protein. (242 aa)    
Predicted Functional Partners:
AEB30441.1
Dipeptidase 1 precursor.
     0.932
yrkD
Hypothetical protein.
   
    0.583
glnA1
Glutamate--ammonia ligase.
  
  
 0.562
glnA2
Glutamate--ammonia ligase; Belongs to the glutamine synthetase family.
  
  
 0.562
sufS
Cysteine desulfurase; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family.
     
 0.512
sufC
Sulfur mobilizing ABC protein, ATPase.
       0.505
iscU
Iron-sulfur cluster assembly scaffold protein.
       0.491
sufB
FeS cluster formation protein.
       0.481
sufD
FeS assembly protein SufD.
       0.479
comEC
DNA channel for uptake in competent cells.
     
 0.462
Your Current Organism:
Carnobacterium sp. 174
NCBI taxonomy Id: 208596
Other names: C. sp. 17-4, Carnobacterium sp. 17-4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.