Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
sufBFeS cluster formation protein. (464 aa)    
Predicted Functional Partners:
sufC
Sulfur mobilizing ABC protein, ATPase.
 0.999
sufD
FeS assembly protein SufD.
 
 
0.998
sufS
Cysteine desulfurase; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family.
 
 
 0.997
iscU
Iron-sulfur cluster assembly scaffold protein.
 
 
 0.996
yitW
Hypothetical protein.
 
   
 0.811
prfA
Peptide chain release factor 1; Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA.
     
 0.556
yvdE
Putative glutamine amidotransferase-like protein.
       0.496
iscS1
Cysteine desulfurase.
  
 
 0.455
iscS2
Cysteine desulfurase involved in tRNA thiolation.
  
 
 0.455
Your Current Organism:
Carnobacterium sp. 174
NCBI taxonomy Id: 208596
Other names: C. sp. 17-4, Carnobacterium sp. 17-4
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