Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Gene Fusion
Co-occurrence
Co-expression
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[Homology]
Score
yvrCPutative lipoprotein binding vitamin B12. (346 aa)    
Predicted Functional Partners:
yvrB
Putative vitamin B12 permease; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
 0.989
yfmF
Iron-dicitrate ABC transporter; ATP-binding protein.
 
 
 0.942
AEB29063.1
Osmoprotectant transport system permease protein; Putative glycine/betaine/carnitine/choline ABC transporter, substrate binding and membrane-spanning subunits.
     
 0.768
yfiN
Putative ABC transporter; Permease.
  
 
  0.727
appA
Oligopeptide-binding protein AppA.
    
 0.708
adcC
Zinc transport system ATP-binding protein AdcC; ATP-binding protein.
    
 0.660
mntB
Manganese transport system ATP-binding protein MntB.
    
 0.660
opuAB
Glycine betaine transport system permease protein OpuAB.
    
 0.653
fbpC
Fe(3+) ions import ATP-binding protein FbpC; Belongs to the ABC transporter superfamily.
     
 0.652
msmX
Multiple sugar-binding transporter ATP-binding protein; Belongs to the ABC transporter superfamily.
     
 0.652
Your Current Organism:
Carnobacterium sp. 174
NCBI taxonomy Id: 208596
Other names: C. sp. 17-4, Carnobacterium sp. 17-4
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