Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
yvrBPutative vitamin B12 permease; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily. (343 aa)    
Predicted Functional Partners:
yvrC
Putative lipoprotein binding vitamin B12.
 
 0.989
yfmF
Iron-dicitrate ABC transporter; ATP-binding protein.
 
 
  0.968
AEB28891.1
Binding-protein-dependent transport systems inner membrane component.
     
 0.572
ribA
Bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
     
 0.476
AEB30330.1
Protein of unknown function DUF214.
  
 
 0.471
opuAB
Glycine betaine transport system permease protein OpuAB.
     
 0.454
AEB28972.1
Putative drug ABC exporter, ATP-binding and membrane-spanning/permease subunits.
  
 
 0.443
opuAA
Glycine betaine transport ATP-binding protein OpuAA.
     
 0.420
Your Current Organism:
Carnobacterium sp. 174
NCBI taxonomy Id: 208596
Other names: C. sp. 17-4, Carnobacterium sp. 17-4
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