STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ytgPPutative enzyme involved in polysaccharide biosynthesis. (558 aa)    
Predicted Functional Partners:
ytzG1
16S pseudouridylate synthase; Belongs to the pseudouridine synthase RsuA family.
  
    0.689
ylbN
Hypothetical protein.
  
    0.648
pbpA
Transpeptidase; Penicillin-binding protein 2A.
 
  
 0.638
yycH
Regulator of YycFG.
  
     0.633
ytxG
Hypothetical protein.
  
     0.617
yrzB
Hypothetical protein; Belongs to the UPF0473 family.
  
     0.612
walH
Regulator of WalKR.
  
    0.576
rpoE
DNA-directed RNA polymerase, subunit delta; Participates in both the initiation and recycling phases of transcription. In the presence of the delta subunit, RNAP displays an increased specificity of transcription, a decreased affinity for nucleic acids, and an increased efficiency of RNA synthesis because of enhanced recycling; Belongs to the RpoE family.
  
     0.562
divIB
Cell-division initiation protein; Cell division protein that may be involved in stabilizing or promoting the assembly of the division complex; Belongs to the FtsQ/DivIB family. DivIB subfamily.
  
     0.559
ytxK
Putative nucleic acid methyltransferase.
  
    0.553
Your Current Organism:
Carnobacterium sp. 174
NCBI taxonomy Id: 208596
Other names: C. sp. 17-4, Carnobacterium sp. 17-4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.