STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
liaSTwo-component sensor histidine kinase [YvqC] sensing cell wall stress. (342 aa)    
Predicted Functional Partners:
liaR
Two-component response regulator [YvqE] responding to cell wall stress.
 
 0.999
liaF
Integral inner membrane protein.
 
  
 0.979
yvlB
Hypothetical protein.
 
  
 0.914
yvlC
Putative regulator; Stress mediated.
  
  
 0.760
xpaC
Putative phosphatase.
  
    0.737
pbp1B
Bifunctional glycosyltransferase/transpeptidase penicillin-binding protein 1B.
  
  
 0.707
ytoI
Hypothetical protein.
 
     0.686
ktrC1
Ktr system potassium uptake protein C.
  
    0.653
AEB29409.1
Hypothetical protein.
  
     0.632
prkC
Protein kinase.
  
  
 0.571
Your Current Organism:
Carnobacterium sp. 174
NCBI taxonomy Id: 208596
Other names: C. sp. 17-4, Carnobacterium sp. 17-4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.