Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
liaRTwo-component response regulator [YvqE] responding to cell wall stress. (210 aa)    
Predicted Functional Partners:
liaS
Two-component sensor histidine kinase [YvqC] sensing cell wall stress.
 
 0.999
liaF
Integral inner membrane protein.
 
  
 0.944
AEB30320.1
Hypothetical signaling protein.
  
 
 0.796
AEB29725.1
Hypothetical protein.
  
  
 0.736
yvlB
Hypothetical protein.
 
  
 0.672
AEB30257.1
Putative transcriptional regulator with a sugar kinase domain, GntR family.
  
 
 0.654
AEB30898.1
Hypothetical protein.
  
  
 0.645
rsmB
Ribosomal RNA small subunit methyltransferase B; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA.
  
  
 0.643
greA
Transcription elongation factor GreA; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides.
  
  
 0.639
ktrC1
Ktr system potassium uptake protein C.
  
    0.612
Your Current Organism:
Carnobacterium sp. 174
NCBI taxonomy Id: 208596
Other names: C. sp. 17-4, Carnobacterium sp. 17-4
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