STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ylbCHypothetical protein. (383 aa)    
Predicted Functional Partners:
braE
High-affinity branched-chain amino acid transport system permease protein; Belongs to the binding-protein-dependent transport system permease family.
   
   0.744
ylbG
Hypothetical protein.
 
     0.727
yteJ
Putative integral inner membrane protein.
  
    0.589
pycA
Pyruvate carboxylase; Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second.
       0.583
yoeD
Putative excisionase.
  
     0.573
ypiB
Hypothetical protein; Belongs to the UPF0302 family.
  
     0.571
rnhC
Ribonuclease HIII; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids.
  
     0.555
yobO
Pre-neck appendage protein.
 
    0.541
yqzD
Hypothetical protein.
  
     0.532
yycN
Putative N-acetyltransferase.
 
     0.515
Your Current Organism:
Carnobacterium sp. 174
NCBI taxonomy Id: 208596
Other names: C. sp. 17-4, Carnobacterium sp. 17-4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.