STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ygaCHypothetical protein; Belongs to the UPF0374 family. (178 aa)    
Predicted Functional Partners:
cysS
cysteine--tRNA ligase; Belongs to the class-I aminoacyl-tRNA synthetase family.
 
      0.646
yfhQ
A/G-specific adenine glycosylase or DNA-(apurinic or apyrimidinic site) lyase; Adenine glycosylase active on G-A mispairs.
 
     0.635
yneF
Hypothetical protein.
 
    0.602
AEB30068.1
Hypothetical protein.
     
 0.567
yrrL
Hypothetical protein; Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation. Belongs to the transglycosylase MltG family.
  
     0.560
recX
Regulatory protein RecX; Modulates RecA activity; Belongs to the RecX family.
       0.550
yugI
General stress protein 13.
  
    0.513
yhaM
3'-5' exoribonuclease YhaM.
  
     0.404
Your Current Organism:
Carnobacterium sp. 174
NCBI taxonomy Id: 208596
Other names: C. sp. 17-4, Carnobacterium sp. 17-4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.