STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ywqC1Putative capsular polysaccharide biosynthesis protein YwqC. (245 aa)    
Predicted Functional Partners:
ptkA
Protein tyrosine kinase.
 
 0.992
AEB30209.1
Putative polysaccharide biosynthesis protein, chain length determination.
 
 0.971
ywqE
Protein tyrosine-phosphatase.
 
 
 0.894
AEB30196.1
Hypothetical protein.
 
 
 0.831
epsL
Putative phosphotransferase involved in extracellular matrix synthesis.
 
  
 0.800
AEB30091.1
Putative teichoic acid/polysaccharide export protein.
 
  
 0.758
epsC
Putative UDP-sugar epimerase.
 
  
 0.753
AEB30208.1
Putative priming glycosyl transferase.
 
  
 0.692
tuaA
Teichuronic acid biosynthesis protein; RBL00298.
 
  
 0.538
epsH1
Putative glycosyltransferase EpsH.
  
  
 0.495
Your Current Organism:
Carnobacterium sp. 174
NCBI taxonomy Id: 208596
Other names: C. sp. 17-4, Carnobacterium sp. 17-4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.