STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ybbH1Putative transcriptional regulator. (285 aa)    
Predicted Functional Partners:
murQ
N-acetylmuramic acid 6-phosphate etherase; Specifically catalyzes the cleavage of the D-lactyl ether substituent of MurNAc 6-phosphate, producing GlcNAc 6-phosphate and D- lactate.
 
  
 0.849
ybbF
Putative sugar phosphotransferase enzyme II.
 
  
 0.704
AEB30113.1
Protein of unknown function DUF871.
 
     0.694
AEB30109.1
Hypothetical protein.
       0.485
scrA
Sucrose-specific phosphotransferase system, enzyme IIBCA.
  
  
 0.449
bglP1
PTS system beta-glucoside-specific EIIBCA component.
  
  
 0.449
ptsG1
PTS system glucose-specific EIICBA component.
  
  
 0.449
bglP3
PTS system beta-glucoside-specific EIIBCA component.
  
  
 0.449
yxeH2
Uncharacterized protein YxeH.
  
    0.441
Your Current Organism:
Carnobacterium sp. 174
NCBI taxonomy Id: 208596
Other names: C. sp. 17-4, Carnobacterium sp. 17-4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.