STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
scrR1Sucrose operon repressor. (337 aa)    
Predicted Functional Partners:
ywlF
Ribose-5-phosphate isomerase B.
       0.486
rpe2
Ribulose-phosphate 3-epimerase.
       0.475
AEB30833.1
Transcriptional regulatory protein.
  
     0.439
bglP3
PTS system beta-glucoside-specific EIIBCA component.
  
  
 0.434
rbsK
Ribokinase; Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5-phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway.
 
  
 0.430
pyk
Pyruvate kinase; Belongs to the pyruvate kinase family.
    
 
 0.427
yvoA
Transcriptional regulator; GntR family.
  
     0.421
gmuR1
HTH-type transcriptional regulator GmuR.
  
     0.415
ptsH
Phosphocarrier protein HPr.
   
 
 0.410
Your Current Organism:
Carnobacterium sp. 174
NCBI taxonomy Id: 208596
Other names: C. sp. 17-4, Carnobacterium sp. 17-4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.