STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
potDSpermidine/putrescine ABC transporter, substrate binding lipoprotein precursor. (357 aa)    
Predicted Functional Partners:
potC
Spermidine/putrescine ABC transporter, membrane-spanning protein.
 
 0.999
potB
Spermidine/putrescine ABC transporter, membrane-spanning subunit.
 
 
 0.996
potA
Spermidine/putrescine ABC transporter, ATP-binding subunit; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Spermidine/putrescine importer (TC 3.A.1.11.1) family.
 
 
 0.996
AEB30757.1
ABC transporter, permease protein.
  
 0.991
AEB30758.1
Binding-protein-dependent transport systems inner membrane component.
 
  
 0.927
AEB30756.1
ABC transporter; Belongs to the ABC transporter superfamily.
 
  
 0.774
sinR
Transcriptional regulator for post-exponential-phase response.
 
   
 0.739
murB
UDP-N-acetylenolpyruvoylglucosamine reductase; Cell wall formation.
  
  
 0.506
Your Current Organism:
Carnobacterium sp. 174
NCBI taxonomy Id: 208596
Other names: C. sp. 17-4, Carnobacterium sp. 17-4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.