Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
gspA3General stress protein A. (288 aa)    
Predicted Functional Partners:
ydaG
Putative general stress protein.
   
  
 0.560
gspA2
General stress protein A.
 
    
0.552
yfkM
General stress protein 18.
   
  
 0.540
AEB29010.1
Organic hydroperoxide resistance protein.
   
    0.481
AEB29694.1
Hypothetical protein.
   
    0.481
ohrA
Peroxiredoxin.
   
    0.481
dps
DNA-protecting protein, ferritin; Belongs to the Dps family.
  
    0.426
csbD
Stress response protein; Belongs to the UPF0337 (CsbD) family.
   
    0.425
AEB29282.1
Hypothetical protein.
   
  
 0.417
Your Current Organism:
Carnobacterium sp. 174
NCBI taxonomy Id: 208596
Other names: C. sp. 17-4, Carnobacterium sp. 17-4
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