Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Co-expression
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[Homology]
Score
copACopper transporter ATPase. (815 aa)    
Predicted Functional Partners:
atkY
Negative regulator of copper transport operon, AtkY.
  
  
 0.939
AEB30571.1
Putative copper-chaperone/transport protein.
 
 
 0.918
AEB30768.1
Putative heavy metal-chaperone/transport protein.
  
 
 0.685
AEB30769.1
Hypothetical protein.
  
 
 0.685
cadA1
Cadmium-transporting ATPase.
 
 
0.636
zosA2
Zinc-transporting ATPase.
 
 
0.636
zosA1
Zinc-transporting ATPase.
 
 
0.635
czrA
Multiple metal-sensing ArsR-SmtB transcriptional repressors family.
 
  
 0.634
dnaK
Molecular chaperone DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family.
 
 0.628
yrkD
Hypothetical protein.
  
  
 0.615
Your Current Organism:
Carnobacterium sp. 174
NCBI taxonomy Id: 208596
Other names: C. sp. 17-4, Carnobacterium sp. 17-4
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