STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
atkYNegative regulator of copper transport operon, AtkY. (148 aa)    
Predicted Functional Partners:
copA
Copper transporter ATPase.
  
  
 0.941
AEB30571.1
Putative copper-chaperone/transport protein.
  
  
 0.916
AEB30768.1
Putative heavy metal-chaperone/transport protein.
  
  
 0.623
AEB30769.1
Hypothetical protein.
  
  
 0.623
motB
Flagellar motor protein MotB.
       0.491
motA
Flagellar motor protein MotA.
       0.491
ymdA
Phosphodiesterase; Endoribonuclease that initiates mRNA decay. Belongs to the RNase Y family.
      
 0.448
birA
Biotin acetyl-CoA-carboxylase ligase and biotin regulon repressor; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a repressor; Belongs to the biotin--protein ligase family.
      
 0.414
Your Current Organism:
Carnobacterium sp. 174
NCBI taxonomy Id: 208596
Other names: C. sp. 17-4, Carnobacterium sp. 17-4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.