Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
crtNDehydrosqualene desaturase. (503 aa)    
Predicted Functional Partners:
crtM
Dehydrosqualene synthase.
 
  
 0.986
crtQ
4,4'-diaponeurosporenoate glycosyltransferase.
 
   
 0.830
crtO
Glycosyl-4,4'-diaponeurosporenoate acyltransferase.
 
   
 0.791
AEB30582.1
Transcriptional regulatory protein.
     
 0.642
ywdH
Putative aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
 
  
 0.617
crtP
4,4'-diaponeurosporene oxidase.
 
    
0.599
AEB30583.1
Putative ABC exporter, ATP-binding subunit.
       0.552
AEB30584.1
Putative ABC exporter, membrane-spanning/permease subunit.
       0.536
Your Current Organism:
Carnobacterium sp. 174
NCBI taxonomy Id: 208596
Other names: C. sp. 17-4, Carnobacterium sp. 17-4
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