Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
AEB30593.1Transcriptional regulatory protein. (256 aa)    
Predicted Functional Partners:
malA
6-phospho-alpha-glucosidase.
 
  
 0.873
malP
Phosphotransferase system (PTS) maltose-specific enzyme IICB component.
 
  
 0.759
AEB30594.1
Lipolytic protein G-D-S-L family.
 
    0.735
AEB29186.1
Hypothetical protein.
  
     0.645
licH
6-phospho-beta-glucosidase.
 
  
 0.608
murQ
N-acetylmuramic acid 6-phosphate etherase; Specifically catalyzes the cleavage of the D-lactyl ether substituent of MurNAc 6-phosphate, producing GlcNAc 6-phosphate and D- lactate.
 
  
 0.476
AEB29234.1
Putative lipoprotein.
  
     0.457
AEB29183.1
Hypothetical protein.
  
     0.417
Your Current Organism:
Carnobacterium sp. 174
NCBI taxonomy Id: 208596
Other names: C. sp. 17-4, Carnobacterium sp. 17-4
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