STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yqiRPutative sigma L-dependent transcriptional regulator. (899 aa)    
Predicted Functional Partners:
sigL
RNA polymerase sigma-54 factor; sigma-L.
 
 
 
 0.972
licB
Phosphotransferase system (PTS) lichenan-specific enzyme IIB component.
 
   
 0.794
licA
Phosphotransferase system (PTS) lichenan-specific enzyme IIA component.
 
   
 0.761
AEB30862.1
Putative PTS system, IIB component.
 
   
 0.679
gmuC1
Oligo-alpha-mannoside phosphotransferase system enzyme IIC; The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS), a major carbohydrate active -transport system, catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane.
 
   
 0.678
gmuR2
HTH-type transcriptional regulator GmuR; GntR family.
       0.664
levE1
Fructose-specific phosphotransferase enzyme IIB component.
  
  
 0.639
AEB30167.1
PTS system, lactose/cellobiose family IIC subunit; The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS), a major carbohydrate active -transport system, catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane.
 
   
 0.588
licR2
licABCH operon regulator.
 
   
 0.584
AEB30163.1
Hypothetical protein.
 
   
 0.556
Your Current Organism:
Carnobacterium sp. 174
NCBI taxonomy Id: 208596
Other names: C. sp. 17-4, Carnobacterium sp. 17-4
Server load: medium (52%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.