Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ulaA2Ascorbate-specific permease IIC component UlaA. (450 aa)    
Predicted Functional Partners:
AEB30608.1
Hypothetical protein.
 
 
 0.995
AEB30183.1
Hypothetical protein.
 
 
 0.986
mtlR2
Transcriptional regulator MtlR.
 
 
 0.982
AEB30609.1
Hypothetical protein.
 
  
 0.935
ptsH
Phosphocarrier protein HPr.
    
 0.907
ulaA1
Ascorbate-specific permease IIC component UlaA.
  
  
 
0.905
manR
Transcriptional regulator ManR.
 
  
 0.566
licR2
licABCH operon regulator.
 
  
 0.549
licR1
licABCH operon regulator.
 
  
 0.521
AEB30181.1
Hypothetical protein.
 
    0.516
Your Current Organism:
Carnobacterium sp. 174
NCBI taxonomy Id: 208596
Other names: C. sp. 17-4, Carnobacterium sp. 17-4
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