STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ganAArabinogalactan type I oligomer exo-hydrolase; Beta-galactosidase, lactase. (687 aa)    
Predicted Functional Partners:
bgaC
Beta-galactosidase.
 
  
  0.922
galM1
Aldose 1-epimerase.
  
 
 0.916
galM2
Aldose 1-epimerase; Converts alpha-aldose to the beta-anomer.
  
 
 0.916
yoxA
Putative epimerase.
  
 
 0.916
cycB
Cyclodextrin-binding lipoprotein.
 
  
 0.683
ganP
Arabinogalactan oligomer permease.
 
    0.682
ganQ
Arabinogalactan oligomer permease.
 
  
 0.677
abfA1
alpha-N-arabinofuranosidase.
 
  
 0.606
AEB29014.1
Extracellular solute-binding protein family 1.
 
  
 0.561
sacA
Sucrase-6-phosphate hydrolase; Enables the bacterium to metabolize sucrose as a sole carbon source; Belongs to the glycosyl hydrolase 32 family.
     
 0.506
Your Current Organism:
Carnobacterium sp. 174
NCBI taxonomy Id: 208596
Other names: C. sp. 17-4, Carnobacterium sp. 17-4
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