cycB protein (Carnobacterium sp. 174) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

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[Homology]

Score

cycB

Cyclodextrin-binding lipoprotein. (427 aa)

Predicted Functional Partners:

ganQ

0.998

ganP

0.997

mdxG

0.996

mdxF

0.994

msmX

0.991

fbpC

0.985

mdxE2

0.959

mdxE1

0.916

frlN

0.860

lacF

0.858

Your Current Organism:

Carnobacterium sp. 174

NCBI taxonomy Id: 208596
Other names: C. sp. 17-4, Carnobacterium sp. 17-4

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
cycB	fbpC	CAR_c19590	CAR_c04760	Cyclodextrin-binding lipoprotein.	Fe(3+) ions import ATP-binding protein FbpC; Belongs to the ABC transporter superfamily.	0.985
cycB	frlN	CAR_c19590	CAR_c14600	Cyclodextrin-binding lipoprotein.	Putative fructose-amino acid permease.	0.860
cycB	ganP	CAR_c19590	CAR_c19580	Cyclodextrin-binding lipoprotein.	Arabinogalactan oligomer permease.	0.997
cycB	ganQ	CAR_c19590	CAR_c19570	Cyclodextrin-binding lipoprotein.	Arabinogalactan oligomer permease.	0.998
cycB	lacF	CAR_c19590	CAR_c21470	Cyclodextrin-binding lipoprotein.	Lactose transport system permease protein LacF.	0.858
cycB	mdxE1	CAR_c19590	CAR_c13950	Cyclodextrin-binding lipoprotein.	Maltodextrin-binding protein MdxE.	0.916
cycB	mdxE2	CAR_c19590	CAR_c13960	Cyclodextrin-binding lipoprotein.	Maltodextrin-binding protein MdxE.	0.959
cycB	mdxF	CAR_c19590	CAR_c13940	Cyclodextrin-binding lipoprotein.	Maltodextrin ABC transport system; Permease.	0.994
cycB	mdxG	CAR_c19590	CAR_c13930	Cyclodextrin-binding lipoprotein.	Maltodextrin ABC transporter; Permease.	0.996
cycB	msmX	CAR_c19590	CAR_c24840	Cyclodextrin-binding lipoprotein.	Multiple sugar-binding transporter ATP-binding protein; Belongs to the ABC transporter superfamily.	0.991
fbpC	cycB	CAR_c04760	CAR_c19590	Fe(3+) ions import ATP-binding protein FbpC; Belongs to the ABC transporter superfamily.	Cyclodextrin-binding lipoprotein.	0.985
fbpC	frlN	CAR_c04760	CAR_c14600	Fe(3+) ions import ATP-binding protein FbpC; Belongs to the ABC transporter superfamily.	Putative fructose-amino acid permease.	0.949
fbpC	ganP	CAR_c04760	CAR_c19580	Fe(3+) ions import ATP-binding protein FbpC; Belongs to the ABC transporter superfamily.	Arabinogalactan oligomer permease.	0.981
fbpC	ganQ	CAR_c04760	CAR_c19570	Fe(3+) ions import ATP-binding protein FbpC; Belongs to the ABC transporter superfamily.	Arabinogalactan oligomer permease.	0.979
fbpC	lacF	CAR_c04760	CAR_c21470	Fe(3+) ions import ATP-binding protein FbpC; Belongs to the ABC transporter superfamily.	Lactose transport system permease protein LacF.	0.985
fbpC	mdxE1	CAR_c04760	CAR_c13950	Fe(3+) ions import ATP-binding protein FbpC; Belongs to the ABC transporter superfamily.	Maltodextrin-binding protein MdxE.	0.985
fbpC	mdxE2	CAR_c04760	CAR_c13960	Fe(3+) ions import ATP-binding protein FbpC; Belongs to the ABC transporter superfamily.	Maltodextrin-binding protein MdxE.	0.985
fbpC	mdxF	CAR_c04760	CAR_c13940	Fe(3+) ions import ATP-binding protein FbpC; Belongs to the ABC transporter superfamily.	Maltodextrin ABC transport system; Permease.	0.981
fbpC	mdxG	CAR_c04760	CAR_c13930	Fe(3+) ions import ATP-binding protein FbpC; Belongs to the ABC transporter superfamily.	Maltodextrin ABC transporter; Permease.	0.976
fbpC	msmX	CAR_c04760	CAR_c24840	Fe(3+) ions import ATP-binding protein FbpC; Belongs to the ABC transporter superfamily.	Multiple sugar-binding transporter ATP-binding protein; Belongs to the ABC transporter superfamily.	0.985