arcD protein (Carnobacterium sp. 174) - STRING interaction network

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

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experimentally determined

co-expression

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gene co-occurrence

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[Homology]

Score

arcD

Arginine/ornithine antiporter. (475 aa)

Predicted Functional Partners:

ykgA

0.946

arcC

0.912

arcB

0.787

arcR

0.779

cpkA

0.585

AEB28768.1

0.458

dexB

0.458

nplT

0.458

malL1

0.458

malL2

0.458

Your Current Organism:

Carnobacterium sp. 174

NCBI taxonomy Id: 208596
Other names: C. sp. 17-4, Carnobacterium sp. 17-4

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AEB28768.1	arcD	CAR_c00170	CAR_c19650	Alpha amylase catalytic region.	Arginine/ornithine antiporter.	0.458
AEB28768.1	malL1	CAR_c00170	CAR_c13980	Alpha amylase catalytic region.	Oligo-1,6-glucosidase.	0.905
AEB28768.1	malL2	CAR_c00170	CAR_c13990	Alpha amylase catalytic region.	Oligo-1,6-glucosidase.	0.916
AEB28768.1	nplT	CAR_c00170	CAR_c13970	Alpha amylase catalytic region.	Neopullulanase; Belongs to the glycosyl hydrolase 13 family.	0.902
arcB	arcC	CAR_c19660	CAR_c19640	Ornithine transcarbamoylase; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline.	Carbamate kinase; Belongs to the carbamate kinase family.	0.994
arcB	arcD	CAR_c19660	CAR_c19650	Ornithine transcarbamoylase; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline.	Arginine/ornithine antiporter.	0.787
arcB	arcR	CAR_c19660	CAR_c19630	Ornithine transcarbamoylase; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline.	Arginine deiminase pathway transcriptional regulator, Crp family.	0.597
arcB	cpkA	CAR_c19660	CAR_c17700	Ornithine transcarbamoylase; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline.	Carbamate kinase; Belongs to the carbamate kinase family.	0.987
arcB	ykgA	CAR_c19660	CAR_c19670	Ornithine transcarbamoylase; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline.	Putative aminohydrolase.	0.997
arcC	arcB	CAR_c19640	CAR_c19660	Carbamate kinase; Belongs to the carbamate kinase family.	Ornithine transcarbamoylase; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline.	0.994
arcC	arcD	CAR_c19640	CAR_c19650	Carbamate kinase; Belongs to the carbamate kinase family.	Arginine/ornithine antiporter.	0.912
arcC	arcR	CAR_c19640	CAR_c19630	Carbamate kinase; Belongs to the carbamate kinase family.	Arginine deiminase pathway transcriptional regulator, Crp family.	0.666
arcC	cpkA	CAR_c19640	CAR_c17700	Carbamate kinase; Belongs to the carbamate kinase family.	Carbamate kinase; Belongs to the carbamate kinase family.	0.908
arcC	ykgA	CAR_c19640	CAR_c19670	Carbamate kinase; Belongs to the carbamate kinase family.	Putative aminohydrolase.	0.973
arcD	AEB28768.1	CAR_c19650	CAR_c00170	Arginine/ornithine antiporter.	Alpha amylase catalytic region.	0.458
arcD	arcB	CAR_c19650	CAR_c19660	Arginine/ornithine antiporter.	Ornithine transcarbamoylase; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline.	0.787
arcD	arcC	CAR_c19650	CAR_c19640	Arginine/ornithine antiporter.	Carbamate kinase; Belongs to the carbamate kinase family.	0.912
arcD	arcR	CAR_c19650	CAR_c19630	Arginine/ornithine antiporter.	Arginine deiminase pathway transcriptional regulator, Crp family.	0.779
arcD	cpkA	CAR_c19650	CAR_c17700	Arginine/ornithine antiporter.	Carbamate kinase; Belongs to the carbamate kinase family.	0.585
arcD	dexB	CAR_c19650	CAR_c13890	Arginine/ornithine antiporter.	Glucan 1,6-alpha-glucosidase.	0.458