STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ohrAPeroxiredoxin. (143 aa)    
Predicted Functional Partners:
ohrR
Transcriptional regulator sensing organic peroxides.
  
 0.939
yugU
Hypothetical protein.
  
    0.609
AEB30582.1
Transcriptional regulatory protein.
 
  
 0.557
dps
DNA-protecting protein, ferritin; Belongs to the Dps family.
  
  
 0.547
AEB30320.1
Hypothetical signaling protein.
   
    0.487
csbD
Stress response protein; Belongs to the UPF0337 (CsbD) family.
  
  
 0.482
addB
ATP-dependent deoxyribonuclease subunit B; ATP-dependent DNA helicase.
   
    0.442
yfkM
General stress protein 18.
  
  
 0.423
ydaG
Putative general stress protein.
  
    0.423
yqxD
Hypothetical protein; Belongs to the UPF0178 family.
       0.415
Your Current Organism:
Carnobacterium sp. 174
NCBI taxonomy Id: 208596
Other names: C. sp. 17-4, Carnobacterium sp. 17-4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.