STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yrbEPutative oxidoreductase. (397 aa)    
Predicted Functional Partners:
iolE
Myo-inositol catabolism protein.
 
  
 0.960
AEB30788.1
Hypothetical protein.
 
     0.815
ybfI
Putative transcriptional regulator; AraC/XylS family, cupin family.
  
  
 0.800
AEB30790.1
Inositol 2-dehydrogenase.
 
    
0.786
epsN
Putative aminotransferase; Belongs to the DegT/DnrJ/EryC1 family.
 
  
 0.653
AEB30152.1
Hypothetical protein.
 
  
 0.571
ybbD
beta-N-acetylhexosaminidase.
 
     0.554
nag3
beta-N-acetylglucosaminidase/beta-glucosidase.
 
     0.536
lysS
lysine--tRNA ligase; Belongs to the class-II aminoacyl-tRNA synthetase family.
  
    0.502
ywdH
Putative aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
  
  
 0.497
Your Current Organism:
Carnobacterium sp. 174
NCBI taxonomy Id: 208596
Other names: C. sp. 17-4, Carnobacterium sp. 17-4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.