STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEB30813.1Hypothetical protein. (149 aa)    
Predicted Functional Partners:
gatC2
Galactitol permease IIC component.
 
  
 0.977
AEB30814.1
Hypothetical protein.
 
  
 0.964
licR1
licABCH operon regulator.
 
    0.910
gatC3
Galactitol permease IIC component.
 
  
 0.904
licR2
licABCH operon regulator.
 
    0.561
manR
Transcriptional regulator ManR.
 
    0.519
AEB30106.1
Hypothetical protein.
 
    0.506
AEB30609.1
Hypothetical protein.
 
    0.489
mtlR2
Transcriptional regulator MtlR.
 
    0.464
yvcJ
Hypothetical protein; Displays ATPase and GTPase activities.
  
  
 0.456
Your Current Organism:
Carnobacterium sp. 174
NCBI taxonomy Id: 208596
Other names: C. sp. 17-4, Carnobacterium sp. 17-4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.