STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yrkDHypothetical protein. (86 aa)    
Predicted Functional Partners:
cdr
Coenzyme A disulfide reductase.
 
   
 0.837
yrkF
Putative rhodanese-like sulfur transferase.
     
 0.825
ywdE
Transcription regulator.
   
    0.794
AEB30956.1
Rhodanese-like domain protein.
     
 0.794
copA
Copper transporter ATPase.
  
  
 0.724
tdh
L-threonine 3-dehydrogenase; Belongs to the zinc-containing alcohol dehydrogenase family. Class-III subfamily.
  
  
 0.699
gutB
Glucitol (sorbitol) dehydrogenase; Belongs to the zinc-containing alcohol dehydrogenase family. Class-III subfamily.
  
  
 0.699
mga
M protein trans-acting positive regulator.
   
    0.625
AEB30250.1
Putative trans-acting regulator.
   
    0.625
yvdE
Putative glutamine amidotransferase-like protein.
   
    0.583
Your Current Organism:
Carnobacterium sp. 174
NCBI taxonomy Id: 208596
Other names: C. sp. 17-4, Carnobacterium sp. 17-4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.