STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yvaAPutative oxidoreductase. (338 aa)    
Predicted Functional Partners:
yulF2
Uncharacterized oxidoreductase YulF.
 
    
0.558
epsN
Putative aminotransferase; Belongs to the DegT/DnrJ/EryC1 family.
  
  
 0.527
proC
Putative oxidoreductase.
  
     0.505
lysS
lysine--tRNA ligase; Belongs to the class-II aminoacyl-tRNA synthetase family.
  
    0.502
ywdH
Putative aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
  
  
 0.497
gabD
Succinate-semialdehyde dehydrogenase.
  
  
 0.497
AEB30152.1
Hypothetical protein.
  
  
 0.495
kdgK1
2-dehydro-3-deoxygluconokinase.
  
  
 0.495
rmlB
dTDP-glucose 4,6-dehydratase.
  
  
 0.495
AEB30598.1
Hypothetical protein.
  
  
 0.495
Your Current Organism:
Carnobacterium sp. 174
NCBI taxonomy Id: 208596
Other names: C. sp. 17-4, Carnobacterium sp. 17-4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.