STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yhfK2Uncharacterized sugar epimerase YhfK. (217 aa)    
Predicted Functional Partners:
yvgN6
Glyoxal reductase.
  
  
 0.669
ydaT
Hypothetical protein.
  
    0.521
AEB30993.1
Putative acetyltransferase, isoleucine patch superfamily.
       0.514
ydaG
Putative general stress protein.
  
    0.470
AEB29047.1
Hypothetical yjdJ protein.
   
    0.468
AEB29930.1
Hypothetical protein.
   
    0.468
csbD
Stress response protein; Belongs to the UPF0337 (CsbD) family.
  
    0.463
lacD
Tagatose 1,6-diphosphate aldolase; Belongs to the aldolase LacD family.
   
    0.463
ykgA
Putative aminohydrolase.
   
    0.461
AEB29800.1
Putative transcriptional regulator.
  
    0.449
Your Current Organism:
Carnobacterium sp. 174
NCBI taxonomy Id: 208596
Other names: C. sp. 17-4, Carnobacterium sp. 17-4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.