STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
oppF2Oligopeptide transport ATP-binding protein OppF; Belongs to the ABC transporter superfamily. (323 aa)    
Predicted Functional Partners:
appC
Oligopeptide ABC transporter; Permease.
  
 0.993
oppC
Oligopeptide ABC transporter; Permease.
 
 0.991
oppB
Oligopeptide ABC transporter; Permease.
 
 0.980
appB
Oligopeptide ABC transporter; Permease.
  
 0.963
oppD2
Oligopeptide transport ATP-binding protein OppD; Belongs to the ABC transporter superfamily.
 
  
0.949
oppF1
Oligopeptide transport ATP-binding protein OppF; ATP-binding protein; Belongs to the ABC transporter superfamily.
  
  
 
0.902
AEB28891.1
Binding-protein-dependent transport systems inner membrane component.
  
  
 0.874
appA
Oligopeptide-binding protein AppA.
 
  
 0.870
ybaF
Putative permease; Transmembrane (T) component of an energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates.
  
 
 0.850
oppD1
Oligopeptide transport ATP-binding protein OppD; ATP-binding protein; Belongs to the ABC transporter superfamily.
 
  
0.781
Your Current Organism:
Carnobacterium sp. 174
NCBI taxonomy Id: 208596
Other names: C. sp. 17-4, Carnobacterium sp. 17-4
Server load: low (18%) [HD]