STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
idnOGluconate 5-dehydrogenase. (273 aa)    
Predicted Functional Partners:
AEB31013.1
PfkB domain protein.
 
 
 0.714
gatC3
Galactitol permease IIC component.
  
    0.665
fabD
Malonyl CoA:acyl carrier protein transacylase.
 
 0.607
ydhK
Hypothetical protein.
   
 
 0.606
kdgK1
2-dehydro-3-deoxygluconokinase.
 
 
 0.547
ywlF
Ribose-5-phosphate isomerase B.
  
  
 0.545
gntK
Gluconate kinase; Belongs to the FGGY kinase family.
  
 
 0.544
yvcT
Putative 2-hydroxyacid dehydrogenase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
  
 0.543
AEB30105.1
Hypothetical protein.
  
  
 0.521
uidA
Beta-glucuronidase; Belongs to the glycosyl hydrolase 2 family.
  
  
 0.505
Your Current Organism:
Carnobacterium sp. 174
NCBI taxonomy Id: 208596
Other names: C. sp. 17-4, Carnobacterium sp. 17-4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.