STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pscBType III export apparatus protein; Product name confidence: Class 1 (Function experimentally demonstrated in P. aeruginosa). (140 aa)    
Predicted Functional Partners:
pscC
Type III secretion outer membrane protein PscC precursor; Product name confidence: Class 1 (Function experimentally demonstrated in P. aeruginosa).
  
  
 0.992
pscD
Type III export protein PscD; Product name confidence: Class 1 (Function experimentally demonstrated in P. aeruginosa).
  
  
 0.975
exsD
ExsD; Product name confidence: Class 1 (Function experimentally demonstrated in P. aeruginosa).
  
  
 0.973
pscG
Type III export protein PscG; Prevents premature polymerization of PscF, along with PscE, within the cytoplasm. Required for type III secretion needle assembly. Also required for cytotoxicity by influencing PscF levels.
  
    0.967
pscH
Type III export protein PscH; Product name confidence: Class 1 (Function experimentally demonstrated in P. aeruginosa).
  
    0.966
pscJ
Type III export protein PscJ; Product name confidence: Class 1 (Function experimentally demonstrated in P. aeruginosa).
  
    0.966
pscI
Type III export protein PscI; Product name confidence: Class 1 (Function experimentally demonstrated in P. aeruginosa).
  
    0.962
pscF
Type III export protein PscF; Major component of the type III secretion needle structure. Required for cytotoxicity on macrophages.
  
  
 0.954
popN
Type III secretion outer membrane protein PopN precursor; Product name confidence: Class 1 (Function experimentally demonstrated in P. aeruginosa).
  
  
 0.943
pscK
Type III export protein PscK; Product name confidence: Class 1 (Function experimentally demonstrated in P. aeruginosa).
  
    0.942
Your Current Organism:
Pseudomonas aeruginosa
NCBI taxonomy Id: 208964
Other names: P. aeruginosa PAO1, Pseudomonas aeruginosa PAO1, Pseudomonas sp. PAO1
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