Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| PA2689 | PA3327 | PA2689 | PA3327 | Hypothetical protein; Product name confidence: Class 4 (Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences). | Probable non-ribosomal peptide synthetase; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene). | 0.700 |
| PA2689 | pchA | PA2689 | PA4231 | Hypothetical protein; Product name confidence: Class 4 (Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences). | Salicylate biosynthesis isochorismate synthase; Involved in the conversion of chorismate to salicylate. | 0.462 |
| PA2689 | pchD | PA2689 | PA4228 | Hypothetical protein; Product name confidence: Class 4 (Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences). | Pyochelin biosynthesis protein PchD; Product name confidence: Class 1 (Function experimentally demonstrated in P. aeruginosa). | 0.829 |
| PA2689 | pchF | PA2689 | PA4225 | Hypothetical protein; Product name confidence: Class 4 (Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences). | Pyochelin synthetase; Product name confidence: Class 1 (Function experimentally demonstrated in P. aeruginosa). | 0.654 |
| PA2689 | phzD1 | PA2689 | PA4213 | Hypothetical protein; Product name confidence: Class 4 (Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences). | Phenazine biosynthesis protein PhzD; Product name confidence: Class 1 (Function experimentally demonstrated in P. aeruginosa). | 0.822 |
| PA2689 | phzD2 | PA2689 | PA1902 | Hypothetical protein; Product name confidence: Class 4 (Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences). | Phenazine biosynthesis protein PhzD; Involved in the biosynthesis of the antibiotic phenazine, a nitrogen-containing heterocyclic molecule. PhzD1 (operon phzA1B1C1E1F1G1) has a role in the biosynthesis of the phenazine during planktonic growth. Catalyzes the hydrolysis of the vinyl ether functional group of 2-amino-2-deoxyisochorismate (ADIC), yielding pyruvate and trans-2,3-dihydro-3-hydroxyanthranilic acid (DHHA). Also able to act on isochorismate, chorismate and 4-amino-4-deoxychorismate (ADC) as substrates ; Belongs to the isochorismatase family. | 0.822 |
| PA2689 | pvdD | PA2689 | PA2399 | Hypothetical protein; Product name confidence: Class 4 (Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences). | Pyoverdine synthetase D; Product name confidence: Class 1 (Function experimentally demonstrated in P. aeruginosa). | 0.655 |
| PA3327 | PA2689 | PA3327 | PA2689 | Probable non-ribosomal peptide synthetase; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene). | Hypothetical protein; Product name confidence: Class 4 (Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences). | 0.700 |
| PA3327 | pchA | PA3327 | PA4231 | Probable non-ribosomal peptide synthetase; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene). | Salicylate biosynthesis isochorismate synthase; Involved in the conversion of chorismate to salicylate. | 0.935 |
| PA3327 | pchD | PA3327 | PA4228 | Probable non-ribosomal peptide synthetase; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene). | Pyochelin biosynthesis protein PchD; Product name confidence: Class 1 (Function experimentally demonstrated in P. aeruginosa). | 0.976 |
| PA3327 | pchF | PA3327 | PA4225 | Probable non-ribosomal peptide synthetase; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene). | Pyochelin synthetase; Product name confidence: Class 1 (Function experimentally demonstrated in P. aeruginosa). | 0.981 |
| PA3327 | phzD1 | PA3327 | PA4213 | Probable non-ribosomal peptide synthetase; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene). | Phenazine biosynthesis protein PhzD; Product name confidence: Class 1 (Function experimentally demonstrated in P. aeruginosa). | 0.982 |
| PA3327 | phzD2 | PA3327 | PA1902 | Probable non-ribosomal peptide synthetase; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene). | Phenazine biosynthesis protein PhzD; Involved in the biosynthesis of the antibiotic phenazine, a nitrogen-containing heterocyclic molecule. PhzD1 (operon phzA1B1C1E1F1G1) has a role in the biosynthesis of the phenazine during planktonic growth. Catalyzes the hydrolysis of the vinyl ether functional group of 2-amino-2-deoxyisochorismate (ADIC), yielding pyruvate and trans-2,3-dihydro-3-hydroxyanthranilic acid (DHHA). Also able to act on isochorismate, chorismate and 4-amino-4-deoxychorismate (ADC) as substrates ; Belongs to the isochorismatase family. | 0.989 |
| PA3327 | phzE1 | PA3327 | PA4214 | Probable non-ribosomal peptide synthetase; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene). | Phenazine biosynthesis protein PhzE; Product name confidence: Class 1 (Function experimentally demonstrated in P. aeruginosa). | 0.693 |
| PA3327 | pvdD | PA3327 | PA2399 | Probable non-ribosomal peptide synthetase; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene). | Pyoverdine synthetase D; Product name confidence: Class 1 (Function experimentally demonstrated in P. aeruginosa). | 0.980 |
| pchA | PA2689 | PA4231 | PA2689 | Salicylate biosynthesis isochorismate synthase; Involved in the conversion of chorismate to salicylate. | Hypothetical protein; Product name confidence: Class 4 (Homologs of previously reported genes of unknown function, or no similarity to any previously reported sequences). | 0.462 |
| pchA | PA3327 | PA4231 | PA3327 | Salicylate biosynthesis isochorismate synthase; Involved in the conversion of chorismate to salicylate. | Probable non-ribosomal peptide synthetase; Product name confidence: Class 3 (Function proposed based on presence of conserved amino acid motif, structural feature or limited sequence similarity to an experimentally studied gene). | 0.935 |
| pchA | pchD | PA4231 | PA4228 | Salicylate biosynthesis isochorismate synthase; Involved in the conversion of chorismate to salicylate. | Pyochelin biosynthesis protein PchD; Product name confidence: Class 1 (Function experimentally demonstrated in P. aeruginosa). | 0.999 |
| pchA | pchF | PA4231 | PA4225 | Salicylate biosynthesis isochorismate synthase; Involved in the conversion of chorismate to salicylate. | Pyochelin synthetase; Product name confidence: Class 1 (Function experimentally demonstrated in P. aeruginosa). | 0.999 |
| pchA | phzD1 | PA4231 | PA4213 | Salicylate biosynthesis isochorismate synthase; Involved in the conversion of chorismate to salicylate. | Phenazine biosynthesis protein PhzD; Product name confidence: Class 1 (Function experimentally demonstrated in P. aeruginosa). | 0.790 |
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