STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CTHT_0021480Serine/threonine-protein kinase RIO1; Involved in the final steps of cytoplasmic maturation of the 40S ribosomal subunit (By similarity). In vitro, has strong ATPase activity and only low protein kinase activity. (519 aa)    
Predicted Functional Partners:
CTHT_0027560
20S-pre-rRNA D-site endonuclease NOB1; Required for the synthesis of 40S ribosome subunits. Has a role in processing 20S pre-rRNA into the mature 18S rRNA, where it is required for cleavage at the 3' end of the mature 18S rRNA (D-site). Accompanies the 20S pre-rRNA from the nucleus to the cytoplasm. Belongs to the NOB1 family.
   
 0.996
CTHT_0062110
Putative low-temperature viability protein.
   
 0.994
CTHT_0047910
40S ribosomal protein S2-like protein; Belongs to the universal ribosomal protein uS5 family.
    
 0.990
CTHT_0071230
40S ribosomal protein S14-like protein; Belongs to the universal ribosomal protein uS11 family.
    
 0.980
CTHT_0005340
40S ribosomal protein S6; Belongs to the eukaryotic ribosomal protein eS6 family.
   
  0.971
CTHT_0011770
40S ribosomal protein s9-like protein; Belongs to the universal ribosomal protein uS4 family.
   
  0.970
CTHT_0021240
40S ribosomal protein S7; Belongs to the eukaryotic ribosomal protein eS7 family.
    
  0.970
CTHT_0026360
40S ribosomal protein S3-like protein; Belongs to the universal ribosomal protein uS3 family.
   
 0.957
CTHT_0005770
Protein arginine N-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily.
    
 
 0.946
CTHT_0007940
Casein kinase I-like protein; Belongs to the protein kinase superfamily.
    
 0.938
Your Current Organism:
Chaetomium thermophilum
NCBI taxonomy Id: 759272
Other names: C. thermophilum var. thermophilum DSM 1495, Chaetomium thermophilum var. thermophilum DSM 1495
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.