STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_001636425_00616Unannotated protein. (58 aa)    
Predicted Functional Partners:
GCA_001636425_00615
Unannotated protein.
       0.773
GCA_001636425_00617
Unannotated protein.
       0.773
GCA_001636425_00613
Unannotated protein.
       0.718
GCA_001636425_00614
Unannotated protein.
       0.718
GCA_001636425_00612
Unannotated protein.
       0.664
GCA_001636425_00611
Unannotated protein.
       0.573
GCA_001636425_00618
Unannotated protein.
       0.532
GCA_001636425_00619
Unannotated protein.
       0.532
GCA_001636425_00620
Unannotated protein.
       0.522
GCA_001636425_00621
Unannotated protein.
       0.497
Your Current Organism:
Bacillus acidicola
NCBI taxonomy Id: 209389
Other names: ATCC BAA-366, B. acidicola, Bacillus acidicola Albert et al. 2005, Bacillus acidogenesis, DSM 14745, NRRL B-23453, strain 105-2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.