STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ycfNPhosphotransferase system PTS lichenan-specific IIa component; COG0510 Thiamine kinase and related kinases [Coenzyme transport and metabolism]. (249 aa)    
Predicted Functional Partners:
engC
Ribosome small subunit-dependent GTPase Eng C; One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Helps release RbfA from mature subunits. May play a role in the assembly of ribosomal proteins into the subunit. Circularly permuted GTPase that catalyzes slow GTP hydrolysis, GTPase activity is stimulated by the 30S ribosomal subunit; Belongs to the TRAFAC class YlqF/YawG GTPase family. RsgA subfamily.
    
  0.902
BAQ54445.1
Hypothetical protein; COG0510 Thiamine kinase and related kinases [Coenzyme transport and metabolism].
 
 
  
0.847
BAQ54397.1
COG4684 Predicted membrane protein [Function unknown]; predicted transmembrane protein; putative carbohydrate kinase.
  
     0.771
BAQ54484.1
Predicted transmembrane protein.
 
     0.766
gyrB-2
DNA gyrase subunit B; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner.
       0.760
atpG-2
Hypothetical protein; COG0224 F0F1-type ATP synthase, gamma subunit [Energy production and conversion]; putative ATP synthase gamma subunit.
 
     0.759
potD
Hypothetical protein; COG0687 Spermidine/putrescine-binding periplasmic protein [Amino acid transport and metabolism]; predicted transmembrane protein.
 
     0.755
BAQ54371.1
Hypothetical protein.
  
     0.742
yqaJ
Hypothetical protein; Pfam09588 YqaJ YqaJ-like viral recombinase domain, This protein family is found in many different bacterial species but is of viral origin. The protein forms an oligomer and functions as a processive alkaline exonuclease that digests linear double-stranded DNA in a Mg(2+)-dependent reaction, It has a preference for 5'-phosphorylated DNA ends. It thus forms part of the two-component SynExo viral recombinase functional unit.
  
     0.724
BAQ54444.1
Predicted transmembrane protein.
       0.707
Your Current Organism:
Mycoplasma arginini
NCBI taxonomy Id: 2094
Other names: ATCC 23838, CIP 71.23, IFO 14476, M. arginini, MRL M1240/68, Mycoplasma leonis, NBRC 14476, NCTC 10129, strain G230
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