STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
wcaACOG1215 Glycosyltransferases, probably involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]. (334 aa)    
Predicted Functional Partners:
asnS
asparaginyl-tRNA-synthetase; COG0017 Aspartyl/asparaginyl-tRNA synthetases [Translation, ribosomal structure and biogenesis].
       0.822
BAQ54481.1
Hypothetical protein; Pfam06271, RDD, RDD family, This family of proteins contain three highly conserved amino acids: one arginine and two aspartates, hence the name of RDD family. This region contains two predicted transmembrane regions. The arginine occurs at the N terminus of the first helix and the first aspartate occurs in the middle of this helix. The molecular function of this region is unknown. However this region may be involved in transport of an as yet unknown set of ligands (Bateman A pers. obs.); predicted transmembrane protein.
       0.818
sunT
Hypothetical protein; COG2274 ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]; predicted transmembrane protein; putative ABC-type bacteriocin transporter.
  
  
 0.498
potA
Spermidine/putrescine ABC transporter ATP binding protein potA; COG0419 ATPase involved in DNA repair [DNA replication, recombination, and repair]; COG3842 ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]; Belongs to the ABC transporter superfamily.
  
    0.497
potC
COG1176 ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport and metabolism]; COG1177 ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism].
       0.493
potB
COG1176 ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport and metabolism]; COG1177 ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism].
       0.492
BAQ54484.1
Predicted transmembrane protein.
       0.488
ybeY
Hypothetical protein; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA.
       0.487
potD
Hypothetical protein; COG0687 Spermidine/putrescine-binding periplasmic protein [Amino acid transport and metabolism]; predicted transmembrane protein.
       0.486
era
GTP-binding protein Era-like protein; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism.
       0.486
Your Current Organism:
Mycoplasma arginini
NCBI taxonomy Id: 2094
Other names: ATCC 23838, CIP 71.23, IFO 14476, M. arginini, MRL M1240/68, Mycoplasma leonis, NBRC 14476, NCTC 10129, strain G230
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